Softwares Disponíveis
Linguagens: C, C++, Fortran, Perl, Python e Java.
Caso o Cluster/UFV não tenha o software que você deseja utilizar, envie um e-mail para dti@ufv.br que iremos avaliar a possibilidade de instalação.
Abaixo segue uma lista dos softwares que podem ser carregados através de módulos (última atualização em 17/04/2023).
Para obter a lista completa de softwares disponíveis em tempo real utilize o comando ‘module avail’
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
|
A |
|||
| abricate/1.0.1 | abyss/2.0.3 | abyss/2.1.5 | agrep/3.41.5 |
| align-graph | alphafold/2.1.1 | ambertools/17 | anaconda2/201903 |
| anaconda3/201903 | antconc/3.5.8 | antismash/5.0.0 | antismash/5.1.1 |
| anuran/1.1.0 | anvio/5.5 | anvio/7.1 | aragorn/1.2.38 |
| arb/6.0.6 | argtable/2.13 | asciidoc/8.6.9 | astral/5.7.1 |
| asymptote/2.65 | atlas/3.10.3 | augustus/3.2.2 | augustus/3.2.3 |
| augustus/3.3.3 | augustus/3.4.0 | autoconf/2.69 | autodock/4.2.6 |
| autodock_vina/1.1.2 | autogrid/4.2.6 | automake/1.15 | automake/1.16.1 |
|
B |
|||
| bamtools/2.4.0 | bamtools/2.5.1 | barrnap/0.9 | bazel/0.19.2 |
| bazel/0.24.1 | bazel/0.25.2 | bazel/0.26.1 | bazel/0.27.1 |
| bazel/0.5.1 | bazel/0.5.4 | bazel/0.6.1 | bazel/0.7.0 |
| bazel/2.0.0 | bbtools/38.93 | bcftools/1.10.2 | bcftools/1.16 |
| beagle/2.1.2 | beagle/3.1.2 | beagle/4.1 | beagle/5.1 |
| beagle_cuda/2.1.2 | beast/1.8.3 | beast/2.4.4 | beast/2.6.6 |
| bedtools/2.26.0 | bedtools/2.27.1 | bepipred/1.0 | berkeley-db/4.7.25 |
| berkeley-db/6.2.23 | binutils/2.29.1 | bioconductor-qvalue/2.30.0 | bison/3.5 |
| blas/3.8.0 | blat/24 | blat/34 | blat/36 |
| blupf90/20170721 | blupf90/20220125 | blupf90/20220722 | blupf90/20230303 |
| bmp-scripts | boost/1.41.0 | boost/1.55.0 | boost/1.58.0 |
| boost/1.60.0 | boost/1.61.0 | boost/1.63.0 | boost/1.70.0 |
| boost/1.71.0 | boost/1.72.0 | boost/1.79.0 | bowtie/0.12.9 |
| bowtie/1.1.2 | bowtie/1.2.1.1 | bowtie2/2.2.8 | bowtie2/2.2.9 |
| bowtie2/2.3.3.1 | bowtie2/2.3.4.3 | bowtie2/2.4.4 | braker/2.1.5 |
| busco/3.0.0 | busco/4.0.5 | busco/5.0.0 | bwa/0.7.12 |
| bwa/0.7.15 | bzip2/1.0.6 | ||
|
C |
|||
| canu/2.1.1 | canu/2.2 | canu/2.2R48786ab | canu/2.2c |
| canu/48786ab | cat/5.2.3 | catastrophy/0.0.5 | cd-hit/4.6.8 |
| cd-hit/4.8.1 | cdbfasta/1.0 | cddblast/2.6.0 | cegma/2.5 |
| centrifuge/1.0.4 | cgenff_charmm2gmx/py3_nx1 | checkm-genome/1.0.13 | checkv/0.7.0 |
| checkv/1.0.1 | chewbbaca/2.8.5 | chlorop/1.1 | cloog/0.18.1 |
| clustal-omega/1.2.3 | clustalw/2.1 | cmake/3.20.2 | cmake/3.6.1 |
| cmake/3.7.0 | consan/1.2 | contig-extender/0.0.1 | cplex/12.10 |
| cplex/12.9 | cppunit/1.12.0 | cppunit/1.12.1 | crisprcasfinder/4.2.20 |
| crisprstudio/1.0 | cuda/11.0 | cuda/7.5 | cuda/8.0 |
| cufflinks/2.2.1 | curl/7.55.1 | cutadapt/2.6 | cutadapt/3.2 |
| cutadapt/3.4 | |||
|
D |
|||
| dagchainer/02062008 | db/4.7.25 | db/6.2.23 | dbus/1.10.8 |
| dct-utils/1.0 | deeptools/3.3.2 | deepvirfinder/2020.11.21 | dialign-t/0.2.2 |
| dialign-tx/1.0.2 | diamond-db/06032023 | diamond/0.9.24 | diamond/0.9.36 |
| diamond/2.0.11 | diamond/2.0.15 | diamond/2.0.4 | diamond/2.1.4 |
| dos2unix/7.4.2 | dram/1.4.0 | ||
|
E |
|||
| ea-utils/1.04.807 | effectorp/3.0 | emboss/6.5.0 | emboss/6.6.0 |
| epa-ng/0.3.5 | eugene/4.2a | eval-align-graph | evidence_modeler/1.1.1 |
| exonerate/2.2.0 | expat/2.2.10 | ||
|
F |
|||
| falcon | famsa/1.6.2 | faprotax/1.1 | fast-tree/2.1.10 |
| fasta/36.3.5a | fasta/36.3.8g | fastme/2.1.5 | fastp/0.23.1 |
| fastqc/0.11.5 | fastqc/0.11.9 | fastspar/0.0.9 | fasttree/2.1.9 |
| fastx/0.0.13 | flex/2.5.39 | flex/2.6.4 | flye/2.8.2 |
| flye/2.8.3 | flye/2.9 | freebayes/1.3.1 | fsa/1.15.9 |
| funannotate/1.7.1 | funannotate/1.8.9 | ||
|
G |
|||
| g2/0.72 | g_mmpbsa/5.1.2 | gamess-mpi/00 | gamess/00 |
| gapfiller/2.1.2 | gapfinisher/2f36a35 | gappa/0.2.0 | gatk/4.2.1.0 |
| gaussian/g09 | gawk/4.1.3 | gawk/4.1.4 | gblocks/0.91b |
| gcc/10.2.0 | gcc/12.1.0 | gcc/12.2.0 | gcc/4.2.4 |
| gcc/4.8.3(default) | gcc/4.9.3 | gcc/5.4.0 | gcc/6.5.0 |
| gcc/7.4.0 | gcc/8.5.0 | gdal/2.2.2 | gdal/2.2.4 |
| gdal/3.4.1 | gdal/3.5.1 | gdbm/1.23 | gene-mark-es-et-ep/4.61 |
| gene-mark-es-et-ep/4.65 | gene-mark-es-et/4.32 | gene-mark-es-et/4.33 | gene-mark-es-et/4.38 |
| gene-mark-es-et/4.57 | gene-mark-s/4.30 | geneid/1.4.4 | genomad-db/07032023 |
| genomad/1.3.3 | genomad/1.5.0 | genomescope/1.0.0 | genomethreader/1.7.0 |
| genomethreader/1.7.3 | genometools/1.5.10 | genometools/1.5.9 | gensim/3.8.0 |
| geos/3.10.2 | geos/3.6.2 | gffread/0.12.7 | ghc/7.10.2 |
| ghc/8.10.7 | git/2.16.2 | git/2.24.1 | glean/1.0.1 |
| glib/2.14.6 | glib/2.36.4 | glib/2.50.0 | glimmerhmm/3.0.3 |
| glpk/4.65 | gmake/4.2.1 | gmap/20171115 | gmap/20210723 |
| gmp/5.1.3 | gmp/6.2.1 | gnuplot/4.0.0 | gnuplot/4.6.7 |
| gnuplot/5.2.6 | gnutls/2.8.6 | gnutls/3.6.3 | go/1.13.3 |
| go/1.16.3 | google-sparsehash/2.0.3 | gor/iv | gperf/3.1 |
| gpp/2.25 | graphviz/7.1.0 | gravity/1.1.0 | grc/1.13 |
| gromacs_cuda/2022.3 | gromacs_cuda/5.1.4 | gromacs_mpi/2018.1 | gromacs_mpi/2018.8 |
| gromacs_mpi/2019.6 | gromacs_mpi/2022.3 | gromacs_mpi/4.5.4 | gromacs_mpi/5.1.4 |
| gromacs_no_mpi/2018.1 | gromacs_no_mpi/5.1.4 | gsl/1.16 | gsl/1.9 |
| gsl/2.6 | guppy/3.7.0 | guppy/4.5.4 | guppy/5.0.11 |
| gvchap/2.1.0 | |||
|
H |
|||
| hdf5/1.10.0 | hdf5/1.10.1 | hdf5/1.12.1 | help2man/1.47.16 |
| hisat2/2.1.0 | hisat2/2.2.1 | hmmer/2.3.2 | hmmer/2.4i |
| hmmer/3.1b2 | hmmer/3.2.1 | hmmer/3.3 | homologhmm/1.05 |
| htseq/0.12.4 | htseq/0.13.5 | htslib/1.10.2 | htslib/1.9 |
| humann-db/15032023 | humann/3.6.1 | hwloc/1.9.1 | hyphy/2.3.3 |
|
I |
|||
| i-adhore/3.0 | ifort/2022.0.2.83 | igv/2.3.72 | imageMagic/7.0.8-45 |
| incubator-sedona/1.3.2 | infernal/1.1.2 | inland/2.0 | integron_finder/2.0 |
| interproscan/5.21-60.0 | interproscan/5.30-69.0 | interproscan/5.44-79.0 | iqtree/1.6.11 |
| irace/3.4.1 | isimpa/1.3.3 | isl/0.12.2 | isl/0.15 |
| isl/0.16.1 | itsx/1.0.11 | itsx/1.1.3 | |
|
J |
|||
| jags/4.3.0 | jasper/1.900.1 | java/jdk1.8.0_101 | java/jdk1.8.0_241 |
| java/jdk11.0.7 | java/jre1.6.0_05-p | java/jre1.7.0_67 | java/jre1.8.0_162 |
| java/jre1.8.0_66 | jcvi-sift/1.03 | jellyfish/2.2.10 | jellyfish/2.3.0 |
| jmodeltest/2.1.10 | joblib/0.17.0 | ||
|
K |
|||
| kalign/1.04 | kalign/3.2.5 | kallisto/0.43.0 | kallisto/0.46.1 |
| kmergenie/1.7051 | kohgpi/1.5 | kraken2/2.0.8 | |
|
L |
|||
| laJollaAssembler/0.2 | lapack/3.10.0 | lapack/3.8.0 | last/980 |
| ldhat/81596e2 | ldhelmet/1.10 | libevent/2.1.12 | libffi/3.2.1 |
| libffi/3.4.4 | libgcrypt/1.8.3 | libgd/2.2.3 | libgit2/1.1.0 |
| libgpg-error/1.32 | libicu/4.2.1 | liblzma/4.27.1 | libnettle/3.4 |
| libogg/1.3.2 | libpng/1.2.50 | libpq/9.6.1 | libpsortb/1.0 |
| libspatialindex/1.9.3 | libtasn1/4.9 | libtheora/1.1.1 | libtiff/3.8.2 |
| libtiff/4.3.0 | libtool/2.4.6 | libunistring/0.9.10 | libuv/1.44.2 |
| libvdpau/0.5 | libvdpau/0.9 | libvdpau/1.1.1 | libvorbis/1.3.5 |
| libxc/4.3.0 | libxc/5.2.3 | liftoff/1.6.3 | lipop/1.0a |
| locarna/1.9.2.1 | lp_solver/5.5.2.5 | lrscaf/1.1.10 | ltr-retriever/2.8 |
| ltr_detector/1.0 | lynx/2.8.8 | lzma/4.32.7 | |
|
M |
|||
| m4/1.4.17 | m4/1.4.18 | mafft/7.305 | mafft/7.453 |
| mafft/7.471 | makedepend/1.0.5 | manta/1.1.0 | mario/1.1 |
| masurca/3.4.2 | masurca/4.0.3 | mauve/20150226 | mcl/14-137 |
| mcr/7.17 | medaka/1.3.3 | medaka/1.6.1 | megacc/10.1.7 |
| megacc/11.0.2 | megacc/7.0.18 | megahit/1.1.4 | megahit/1.2.3 |
| megahit/1.2.9 | meme/4.11.2 | meme/5.0.5 | metabat/2.15 |
| mgltools/1.5.6 | microbiomeutil/1.0 | minced/0.3.0 | miniasm/0.3r179 |
| minibar/0.21 | miniconda2/4.7.12.1 | miniconda2/4.8.3 | miniconda3/22.11.1 |
| miniconda3/4.10.3 | miniconda3/4.11.0 | miniconda3/4.12.0 | miniconda3/4.7.12.1 |
| miniconda3/4.9.2 | minimap2/2.18r1015 | minion_qc/1.4.2 | minpath/1.4 |
| mira/4.9.6 | mira/5rc1 | mmseq2/74e23d | modeller/9.17 |
| modeltest-ng/0.1.7 | mono/1.1.7.4 | mothur/1.36.1 | mothur/1.39.4 |
| mothur/1.39.5 | mothur/1.40.5 | mothur/1.41.1 | mothur/1.42.3 |
| mothur/1.44.1 | mothur/1.44.2 | mothur/1.44.3 | mothur/1.46.1 |
| mothur/1.47.0 | mpc/1.0.3 | mpc/1.2.1 | mpfr/3.1.3 |
| mpfr/4.1.0 | mpich/3.0.4 | mrbayes-gpu/3.2.6 | mrbayes/3.2.7a |
| mreps/2.6 | msa/2.1 | msaprobs-mpi/1.0.5 | msaprobs/0.9.7 |
| mtm-align/20220104 | multiphate/2.1 | multiqc/1.11 | multiqc/1.9 |
| mummer/3.23 | muscle/3.8.1551 | muscle/3.8.31 | muscle/3.8.425 |
| muscle/4.0 | |||
|
N |
|||
| nanocomp/1.15.1 | nanofilt/2.8.0 | nanoplot/1.38.1 | nanopolish/0.13.2 |
| nanostat/1.5.0 | ncbi-amrfinderplus/3.10.5 | ncbi-blast-database/v4 | ncbi-blast-database/v5 |
| ncbi-blast-database/v5.08.2022 | ncbi-blast/2.11.0 | ncbi-blast/2.12.0 | ncbi-blast/2.13.0 |
| ncbi-blast/2.2.28 | ncbi-blast/2.2.31 | ncbi-blast/2.3.0 | ncbi-blast/2.6.0 |
| ncbi-blast/2.7.1 | ncbi-blast/2.9.0 | ncbi-sra-toolkit/2.10.8 | ncbi-sra-toolkit/2.11.0 |
| ncbi-sra-toolkit/2.9.2 | ncbi-sra-toolkit/3.0.0 | ncbi/6.1 | ncurses/6.1 |
| netcdf-fortram/4.5.3 | netcdf/4.1.3 | netcdf/4.8.1 | netmhcii/2.3 |
| nettle/3.4 | networkx/1.11 | nghttp2/1.51.0 | ngs-snp |
| nim/0.18.0 | ninja/0.95-cluster_only | nlopt/2.7.1 | nodejs/18.12.1 |
| novoplasty/3.6 | nseg | nucbreak/1.0 | numactl/2.0.14 |
|
O |
|||
| open-bugs/3.2.2 | open-bugs/3.2.3 | open-scene-graph/3.2.3 | open-scene-graph/3.6.5 |
| openbabel/2.3.2 | openmpi/1.4.4 | openssl/1.0.2t | openssl/1.1.1t |
| orf-finder/0.4.3 | orfm/0.7.1 | orthofinder/2.3.3 | orthofinder/2.5.4 |
| orthomcl/2.0.9 | osgearth/2.7 | ||
|
P |
|||
| p11-kit/0.23.14 | pairfq/0.16.0 | palmscan/189ac11 | paml/4.9h |
| pannzer/2 | papara_nt/2.5 | parallel-netcdf/1.8.1 | parallel/20180822 |
| pasa/2.3.3 | pasta/1.8.5 | paste-classifier/1.0 | patchelf/0.10 |
| paup/4a154 | pblat-cluster/0.1-0 | pblat/1.6-0 | pcma/1.0 |
| pcre/8.38 | pcre/8.43 | pcre2/10.40 | pcre2/2.10.20 |
| pear/0.9.10 | perl/5.20.3 | perl/5.24.0(default) | perl/5.26.1 |
| perl/5.28.2 | perl/5.36.0 | pfam_scan/1.6 | pftools/2.3.4 |
| phageterm/1.0.12 | phanns/1.0.0 | phispy/2.3 | phobius/1.01 |
| phylip/3.696 | phylip/3.697 | phyml/3.1 | phyml/3.3.20190909 |
| phyml/3.3.20200621 | picard/2.23.7 | picard/2.25.7 | picrust/1.1.1 |
| picrust2/2.1.2-b | picrust2/2.3.0-b | piler/1.0 | pilon/1.23 |
| pilon/1.24 | platanus/1.2.4 | plumed/2.6.0 | plumed/2.6.1 |
| plumed/2.8.1 | plumed/2.8.1_C-0-15 | poa/2 | porechop/0.2.4 |
| postgresql/10.1 | ppigremlin/20052020 | prank/170427 | price/1.2 |
| prinseq/0.20.4 | probcons/1.12 | prodigal/2.6.3 | proj/4.9.3 |
| proj/6.3.2 | proj/8.0.0 | prokka/1.13 | prokka/1.14.5 |
| proteinortho/6.0.28 | prothint/2.4.0 | prothint/2.5.0 | psortb/3.0.4 |
| pv/1.6.6 | pycoqc/2.5.2 | python/2.7.11 | python/2.7.17 |
| python/2.7.9 | python/3.11.2 | python/3.5.1 | python/3.5.7 |
| python/3.7.4 | |||
|
Q |
|||
| qcat/1.1.0 | qgis/3.28.2 | qiime/1.9.1 | qiime2/2019.1 |
| qiime2/2019.10 | qiime2/2020.11 | qiime2/2020.8 | qiime2/2021.4 |
| qiime2/2022.2 | qmsim/2.0 | qt/4.8.7 | qt/5.14.1 |
| qt/5.15.9 | qt/5.3.1 | qualimap/2.2 | quantum-espresso/6.4.1 |
| quantum-espresso/6.5 | quantum-espresso/6.5s | quantum-espresso/6.8 | quantum-espresso/7.0 |
| quast/4.3 | quast/5.0.2 | ||
|
R |
|||
| r-virfinder/1.1 | r/3.2.3 | r/3.4.1 | r/3.4.2 |
| r/3.5.3 | r/3.6.3 | r/4.0.2 | r/4.0.3 |
| r/4.1.2 | r/4.2.1 | racon/1.4.3 | ragtag/2.1.0 |
| rapsearch/2.22 | raven/1.5.0 | raven/1.8.1 | raxml-ng/1.0.3 |
| raxml/7.3.0 | raxml/8.2.12 | rdkit/2021.03.2 | reacta/0.9.7 |
| readline/8.0 | reapr/1.0.18 | rebaler/0.2.0 | recon/1.08 |
| redundans/0.14a | repeatMasker/1.0 | repeatMasker/4.0.6 | repeatMasker/4.1.0 |
| repeatMasker/4.1.1 | repeatModeller/1.0.8 | repeatModeller/2.0.1 | repeatScout/1.0.5 |
| repeatScout/1.0.6 | repet/2.5 | repexTarean/0.3.1 | resfinder/4.1 |
| resfinder/default | ripcal/2.0 | rmats/4.0.2 | rmats/4.1.0 |
| rmats2sashimiplot/2.0.3 | rmblast/2.10.0 | rmblast/2.2.28 | rnabloom/1.4.3 |
| rnabloom/2.0.0 | rnammer/1.2 | rnaquast/2.2.1 | roary/3.12.0-17 |
| roary/3.13.0 | rocksdb/5.18.4 | rocksdb/6.6.4 | rsem/1.2.31 |
| rsem/1.3.3 | ruby/3.0.1 | rum/2.0.5_06 | rust/1.67.1 |
|
S |
|||
| sabre/1.00 | salmon/1.3.0 | salmon/1.4.0 | salmon/1.5.0 |
| salmon/1.5.2 | salmon/1.6.0 | salmon/1.9.0 | samtools/0.1.17 |
| samtools/0.2.0-rc7 | samtools/1.10 | samtools/1.11 | samtools/1.12 |
| samtools/1.13 | samtools/1.3 | samtools/1.3.1 | samtools/1.6 |
| samtools/1.7 | samtools/1.7-6d79411 | scipio/1.4 | sdl2-image/2.0.1 |
| sdl2/2.0.5 | seeker/1.0.3 | seg/19980622 | sepp/4.3.9 |
| seqkit/0.14.0 | seqtk/1.2-r95 | sfld/default | sga/0.10.15 |
| shapeit4/4.0 | shapeit4/4.1.3 | signalp/4.1 | singularity/3.5.2 |
| singularity/3.7.3 | snap/2013-11-29 | soapdenovo/2.04 | spades/3.11.0 |
| spades/3.12.0 | spades/3.15.2 | spades/3.15.5 | spades/3.9.0 |
| spark/3.0.0 | spark/3.2.0 | sparsehash/2.0.3 | sqlite/3.29.0 |
| sqlite/3.36.0 | sqlite/3.40.1 | sspace-longread/1.1 | sspace-standard/3.0 |
| stack/2.7.5 | star/2.7.10a | star/2.7.3a | star/2.7.8a |
| star/2.7.9a | stringtie/2.2.0 | structure/2.3.4 | subread/2.0.1 |
| subread/2.0.2 | swig/3.0.10 | swig/3.0.12 | |
|
T |
|||
| t_coffee/13.39 | t_coffee/8.99 | tandemRepeatFinder/4.09 | tantan/13 |
| targetp/1.1b | tbl2asn/forever | tcl-tk/8.6.13 | telescope/1.0.3 |
| tensorflow-java/1.13.2 | tensorflow-java/1.15.0 | tensorflow/2.11.0 | tensorflow/2.9.1 |
| tensorflow_py2.7/1.3 | tensorflow_py3.5/1.3 | tensorflow_py3.7/2.0.0 | texinfo/6.5 |
| thermo_pw/1.2.0 | thermo_pw/1.3.0 | thrgibbs3f90/1.0 | tinker/7.1.2 |
| tmhmm/2.0c | tmux/3.2a | tophat/2.1.1 | tpot/VE |
| transabyss/2.0.1 | transdecoder/3.0.1 | transdecoder/5.5.0 | tree-tagger/3.2.2 |
| trf/4.09 | trimal/1.2 | trimal/1.3 | trimmomatic/0.36 |
| trimmomatic/0.39 | trinity/2.12.0 | trinity/2.13.2 | trinity/2.14.0 |
| trinity/2.2.0 | trinity/2.5.1 | trinotate/3.0.1 | trinotate/3.2.2 |
| trna-scan-se/1.3.1 | txt2regex/0.8 | ||
|
U |
|||
| udunits/2.2.26 | unbound/1.7.3 | unrar/5.6.6 | usearch/10.0.240 |
| usearch/11.0.667 | usearch/5.2.236 | usearch/6.1.544 | usearch/7.0.1090 |
| usearch/8.1.1861 | |||
|
V |
|||
| varscan/2.4.2 | vcf2sm/b4d60cc | vcflib/1.0.3 | vcftools/0.1.13 |
| vcftools/0.1.16 | vcontact2/0.9.22 | vcontact2/0.9.22.md | velvet/1.2.10 |
| velvet/1.2.10_k191 | velvetOptimiser/2.2.6 | vibrant/1.2.1 | viennarna/2.3.1 |
| viennarna/2.4.12 | viptreegen/1.1.2 | viralFlye/0.2 | viridic/1.0r3.6 |
| viridic/1.0r3.6_MD | viromescan/default | virsorter/1.0.6 | virsorter2/2.2.1 |
| virsorter2/2.2.3 | virus-seeker-discovery/0.03 | virus-seeker-virome/0.063 | vmatch/2.3.0 |
| vmd/1.9.3 | vpf-tools/11abf56 | vsearch/2.11.1 | vsearch/2.13.3 |
| vsearch/2.14.2 | vsearch/2.5.0 | ||
|
W |
|||
| weka/3.8.3 | wise/2.4.1 | wombat | worf/3.5.1 |
| wtdbg2/2.5 | wx-widgets/3.1.0 | ||
|
X |
|||
| xmlto/0.0.28 | xz/5.2.3 | xz/5.4.1 | |
|
Y |
|||
|
Z |
|||
| zlib/1.2.11 | zlib/1.2.7 | ||