Softwares Disponíveis
Linguagens: C, C++, Fortran, Perl, Python e Java.
Caso o cluster não tenha o software que você deseja utilizar, envie um e-mail para dti@ufv.br que iremos avaliar a possibilidade de instalação.
Abaixo segue uma lista dos softwares que podem ser carregados através de módulos.
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
|
A |
|||
| abyss/2.1.5 | align-graph | ambertools/17 | anaconda2/201903 |
| anaconda3/201903 | antconc/3.5.8 | antismash/5.0.0 | antismash/5.1.1 |
| antlr4/4.7.2 | anvio/5.5 | aragorn/1.2.38 | arb/6.0.6 |
| argtable/2.13 | asciidoc/8.6.9 | atlas/3.10.3 | augustus/3.2.2 |
| autoconf/2.69 | autodock/4.2.6 | autodock_vina/1.1.2 | autogrid/4.2.6 |
| automake/1.15 | automake/1.16.1 | ||
|
B |
|||
| bamtools/2.4.0 | barrnap/0.9 | bazel/0.19.2 | bazel/0.24.1 |
| bazel/0.25.2 | bazel/0.26.1 | bazel/0.27.1 | bazel/0.5.1 |
| bazel/0.5.4 | bazel/0.6.1 | bazel/0.7.0 | bazel/2.0.0 |
| bcftools/1.10.2 | beagle/2.1.2 | beagle/5.1 | beagle_cuda/2.1.2 |
| beast/1.8.3 | beast/2.4.4 | bedtools/2.26.0 | bedtools/2.27.1 |
| bepipred/1.0 | berkeley-db/6.2.23 | binutils/2.29.1 | bison/3.5 |
| blas/3.8.0 | blat/24 | blat/34 | blat/36 |
| blupf90 | bmp-scripts | boost/1.41.0 | boost/1.55.0 |
| boost/1.58.0 | boost/1.60.0 | boost/1.61.0 | boost/1.63.0 |
| bowtie/0.12.9 | bowtie/1.1.2 | bowtie2/2.2.8 | bowtie2/2.3.3.1 |
| busco/3.0.0 | busco/4.0.5 | bwa/0.7.12 | bwa/0.7.15 |
| bzip2/1.0.6 | |||
|
C |
|||
| cd-hit/4.6.8 | cdbfasta/1.0 | cddblast/2.6.0 | cegma/2.5 |
| chlorop/1.1 | cloog/0.18.1 | clustal-omega/1.2.3 | clustalw/2.1 |
| cmake/3.6.1 | cmake/3.7.0 | consan/1.2 | cppunit/1.12.0 |
| cppunit/1.12.1 | cuda/7.5 | cuda/8.0 | cufflinks/2.2.1 |
| curl/7.55.1 | cutadapt/2.6 | ||
|
D |
|||
| dagchainer/02062008 | db/6.2.23 | dbus/1.10.8 | dct-utils/1.0 |
| deeptools/3.3.2 | dialign-t/0.2.2 | dialign-tx/1.0.2 | diamond/0.9.24 |
|
E |
|||
| ea-utils/1.04.807 | emboss/6.5.0 | emboss/6.6.0 | epa-ng/0.3.5 |
| eugene/4.2a | eval-align-graph | evidence_modeler/1.1.1 | exonerate/2.2.0 |
|
F |
|||
| falcon | faprotax/1.1 | fast-tree/2.1.10 | fasta/36.3.5a |
| fasta/36.3.8g | fastme/2.1.5 | fastqc/0.11.5 | fastspar/0.0.9 |
| fasttree/2.1.9 | fastx/0.0.13 | freebayes/1.3.1 | fsa/1.15.9 |
| funannotate/1.7.1 | |||
|
G |
|||
| g2/0.72 | gamess-mpi/00 | gamess/00 | gappa/0.2.0 |
| gaussian/g09 | gawk/4.1.3 | gawk/4.1.4 | gblocks/0.91b |
| gcc/4.2.4 | gcc/4.8.3(default) | gcc/4.9.3 | gcc/5.4.0 |
| gcc/6.5.0 | gdal/2.2.2 | gene-mark-es-et/4.32 | gene-mark-es-et/4.33 |
| gene-mark-es-et/4.38 | gene-mark-es-et/4.57 | gene-mark-s/4.30 | geneid/1.4.4 |
| genometools/1.5.10 | geos/3.6.2 | ghc/7.10.2 | git/2.16.2 |
| git/2.24.1 | glean/1.0.1 | glib/2.14.6 | glib/2.50.0 |
| glibc/2.14.1 | glibc/2.15 | glimmerhmm/3.0.3 | glpk/4.65 |
| gmake/4.2.1 | gmap/20171115 | gmp/5.1.3 | gnuplot/4.0.0 |
| gnuplot/4.6.7 | gnuplot/5.2.6 | gnutls/2.8.6 | gnutls/3.6.3 |
| google-sparsehash/2.0.3 | gor/iv | gperf/3.1 | gpp/2.25 |
| gromacs_cuda/5.1.4 | gromacs_mpi/2018.8 | gromacs_mpi/4.5.4 | gromacs_mpi/5.1.4 |
| gromacs_no_mpi/5.1.4 | gsl/1.16 | gsl/1.9 | gsl/2.6 |
|
H |
|||
| hdf5/1.10.0 | hdf5/1.10.1 | hisat2/2.1.0 | hmmer/2.4i |
| hmmer/3.1b2 | hmmer/3.2.1 | homologhmm/1.05 | hwloc/1.9.1 |
| hyphy/2.3.3 | |||
|
I |
|||
| i-adhore/3.0 | igv/2.3.72 | imageMagic/7.0.8-45 | infernal/1.1.2 |
| interproscan/5.21-60.0 | interproscan/5.30-69.0 | iqtree/1.6.11 | isimpa/1.3.3 |
| isl/0.12.2 | isl/0.15 | isl/0.16.1 | itsx/1.0.11 |
|
J |
|||
| jasper/1.900.1 | java/jdk1.8.0_101 | java/jdk1.8.0_241 | java/jre1.6.0_05-p |
| java/jre1.7.0_67 | java/jre1.8.0_162 | java/jre1.8.0_66 | jcvi-sift/1.03 |
| jellyfish/2.2.10 | jmodeltest/2.1.10 | ||
|
K |
|||
| kalign/1.04 | kallisto/0.43.0 | kmergenie/1.7051 | kohgpi/1.5 |
| kraken2/2.0.8 | |||
|
L |
|||
| lapack/3.8.0 | last/980 | libffi/3.2.1 | libgcrypt/1.8.3 |
| libgd/2.2.3 | libgpg-error/1.32 | liblzma/4.27.1 | libnettle/3.4 |
| libogg/1.3.2 | libpng/1.2.50 | libpq/9.6.1 | libpsortb/1.0 |
| libtasn1/4.9 | libtheora/1.1.1 | libtiff/3.8.2 | libtool/2.4.6 |
| libunistring/0.9.10 | libvdpau/0.5 | libvdpau/0.9 | libvdpau/1.1.1 |
| libvorbis/1.3.5 | lipop/1.0a | locarna/1.9.2.1 | lynx/2.8.8 |
| lzma/4.32.7 | |||
|
M |
|||
| m4/1.4.17 | m4/1.4.18 | mafft/7.305 | makedepend/1.0.5 |
| mario/1.1 | mauve/20150226 | mcl/14-137 | megacc/10.1.7 |
| megacc/7.0.18 | megahit/1.1.4 | megahit/1.2.3 | meme/4.11.2 |
| meme/5.0.5 | mgltools/1.5.6 | microbiomeutil/1.0 | minced/0.3.0 |
| miniconda2/4.7.12.1 | miniconda3/4.7.12.1 | mmseq2/74e23d | modeller/9.17 |
| mono/1.1.7.4 | mothur/1.36.1 | mothur/1.39.4 | mothur/1.39.5 |
| mothur/1.40.5 | mothur/1.41.1 | mothur/1.42.3 | mpc/1.0.3 |
| mpfr/3.1.3 | mpich/3.0.4 | mrbayes-gpu/3.2.6 | mrbayes/3.1.2 |
| mrbayes/3.2.7a | mreps/2.6 | msa/2.1 | msaprobs-mpi/1.0.5 |
| msaprobs/0.9.7 | mummer/3.23 | muscle/3.8.1551 | muscle/3.8.31 |
| muscle/3.8.425 | muscle/4.0 | ||
|
N |
|||
| ncbi-blast/2.2.28 | ncbi-blast/2.3.0 | ncbi-blast/2.6.0 | ncbi-sra-toolkit/2.9.2 |
| ncurses/6.1 | netcdf/4.1.3 | netmhcii/2.3 | nettle/3.4 |
| ngs-snp | nim/0.18.0 | novoplasty/3.6 | nseg |
|
O |
|||
| open-scene-graph/3.2.3 | open-scene-graph/3.6.5 | openbabel/2.3.2 | openmpi/1.4.4 |
| openssl/1.0.2t | orf-finder/0.1.0 | orthofinder/2.3.3 | orthomcl/2.0.9 |
| osgearth/2.7 | |||
|
P |
|||
| p11-kit/0.23.14 | pairfq/0.16.0 | paml/4.9h | pannzer/2 |
| papara_nt/2.5 | parallel-netcdf/1.8.1 | parallel/20180822 | pasa/2.3.3 |
| pasta/1.8.5 | paste-classifier/1.0 | patchelf/0.10 | paup/4a154 |
| pblat-cluster/0.1-0 | pblat/1.6-0 | pcma/1.0 | pcre/8.38 |
| pcre/8.43 | pcre2/2.10.20 | pear/0.9.10 | perl/5.20.3 |
| perl/5.24.0(default) | perl/5.26.1 | perl/5.28.2 | pfam_scan/1.6 |
| pftools/2.3.4 | phageterm/1.0.12 | phispy/2.3 | phobius/1.01 |
| phylip/3.696 | phyml/3.1 | picrust/1.1.1 | picrust2/2.1.2-b |
| piler/1.0 | plumed/2.6.0 | poa/2 | postgresql/10.1 |
| prank/170427 | prinseq/0.20.4 | probcons/1.12 | prodigal/2.6.3 |
| proj/4.9.3 | prokka/1.13 | prokka/1.14.5 | psortb/3.0.4 |
| python/2.7.11 | python/2.7.17 | python/2.7.9 | python/3.5.1 |
| python/3.5.7 | python/3.7.4 | ||
|
Q |
|||
| qiime/1.9.1 | qiime2/2019.10 | qt/4.8.7 | qt/5.14.1 |
| qt/5.3.1 | qualimap/2.2 | quantum-espresso/6.4.1 | quast/4.3 |
| quast/5.0.2 | |||
|
R |
|||
| r/3.2.3 | r/3.4.1 | r/3.4.2 | r/3.5.3 |
| r/3.6.3 | raxml/7.3.0 | raxml/8.2.12 | readline/8.0 |
| recon/1.08 | repeatMasker/1.0 | repeatMasker/4.0.6 | repeatModeller/1.0.8 |
| repeatScout/1.0.5 | repet/2.5 | repexTarean/0.3.1 | resfinder/default |
| ripcal/2.0 | rmblast/2.2.28 | rnammer/1.2 | roary/3.12.0-17 |
| rocksdb/5.18.4 | rocksdb/6.6.4 | rsem/1.2.31 | |
|
S |
|||
| samtools/0.1.17 | samtools/1.10 | samtools/1.3 | samtools/1.6 |
| scipio/1.4 | sdl2-image/2.0.1 | sdl2/2.0.5 | sepp/4.3.9 |
| seqtk/1.2-r95 | sfld/default | sga/0.10.15 | signalp/4.1 |
| snap/2013-11-29 | soapdenovo/2.04 | spades/3.11.0 | spades/3.12.0 |
| spades/3.9.0 | sparsehash/2.0.3 | sqlite/3.29.0 | sspace-longread/1.1 |
| sspace-standard/3.0 | star/2.7.3a | structure/2.3.4 | swig/3.0.10 |
| swig/3.0.12 | |||
|
T |
|||
| t_coffee/13.39 | t_coffee/8.99 | tandemRepeatFinder/4.09 | tantan/13 |
| targetp/1.1b | tbl2asn/forever | tensorflow-java/1.13.2 | tensorflow-java/1.15.0 |
| tensorflow_py2.7/1.3 | tensorflow_py3.5/1.3 | texinfo/6.5 | thrgibbs3f90/1.0 |
| tinker/7.1.2 | tmhmm/2.0c | tophat/2.1.1 | transdecoder/3.0.1 |
| tree-tagger/3.2.2 | trf/4.09 | trimal/1.2 | trimal/1.3 |
| trimmomatic/0.36 | trinity/2.2.0 | trinity/2.2.0.bk | trinity/2.5.1 |
| trinotate/3.0.1 | trna-scan-se/1.3.1 | txt2regex/0.8 | |
|
U |
|||
| udunits/2.2.26 | unbound/1.7.3 | unrar/5.6.6 | usearch/10.0.240 |
| usearch/5.2.236 | usearch/6.1.544 | usearch/7.0.1090 | usearch/8.1.1861 |
|
V |
|||
| varscan/2.4.2 | vcftools/0.1.13 | velvet/1.2.10 | velvetOptimiser/2.2.6 |
| viennarna/2.3.1 | viennarna/2.4.12 | viromescan/default | virsorter/1.0.6 |
| virus-seeker-discovery/0.03 | virus-seeker-virome/0.063 | vmd/1.9.3 | vsearch/2.11.1 |
| vsearch/2.13.3 | vsearch/2.14.2 | vsearch/2.5.0 | |
|
W |
|||
| weka/3.8.3 | wise/2.4.1 | wombat | worf/3.5.1 |
| wx-widgets/3.1.0 | |||
|
X |
|||
| xmlto/0.0.28 | xz/5.2.3 | ||
|
Y |
|||
|
Z |
|||
| zlib/1.2.7 | |||