Softwares Disponíveis

Linguagens: C, C++, Fortran, Perl, Python e Java.

Caso o cluster não tenha o software que você deseja utilizar, envie um e-mail para dti@ufv.br que iremos avaliar a possibilidade de instalação.

Abaixo segue uma lista dos softwares que podem ser carregados através de módulos.

A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z  

A

abyss/2.1.5 align-graph ambertools/17 anaconda2/201903
anaconda3/201903 antconc/3.5.8 antismash/5.0.0 antismash/5.1.1
antlr4/4.7.2 anvio/5.5 aragorn/1.2.38 arb/6.0.6
argtable/2.13 asciidoc/8.6.9 atlas/3.10.3 augustus/3.2.2
autoconf/2.69 autodock/4.2.6 autodock_vina/1.1.2 autogrid/4.2.6
automake/1.15 automake/1.16.1    

B

bamtools/2.4.0 barrnap/0.9 bazel/0.19.2 bazel/0.24.1
bazel/0.25.2 bazel/0.26.1 bazel/0.27.1 bazel/0.5.1
bazel/0.5.4 bazel/0.6.1 bazel/0.7.0 bazel/2.0.0
bcftools/1.10.2 beagle/2.1.2 beagle/5.1 beagle_cuda/2.1.2
beast/1.8.3 beast/2.4.4 bedtools/2.26.0 bedtools/2.27.1
bepipred/1.0 berkeley-db/6.2.23 binutils/2.29.1 bison/3.5
blas/3.8.0 blat/24 blat/34 blat/36
blupf90 bmp-scripts boost/1.41.0 boost/1.55.0
boost/1.58.0 boost/1.60.0 boost/1.61.0 boost/1.63.0
bowtie/0.12.9 bowtie/1.1.2 bowtie2/2.2.8 bowtie2/2.3.3.1
busco/3.0.0 busco/4.0.5 bwa/0.7.12 bwa/0.7.15
bzip2/1.0.6      

C

cd-hit/4.6.8 cdbfasta/1.0 cddblast/2.6.0 cegma/2.5
chlorop/1.1 cloog/0.18.1 clustal-omega/1.2.3 clustalw/2.1
cmake/3.6.1 cmake/3.7.0 consan/1.2 cppunit/1.12.0
cppunit/1.12.1 cuda/7.5 cuda/8.0 cufflinks/2.2.1
curl/7.55.1 cutadapt/2.6    

D

dagchainer/02062008 db/6.2.23 dbus/1.10.8 dct-utils/1.0
deeptools/3.3.2 dialign-t/0.2.2 dialign-tx/1.0.2 diamond/0.9.24

E

ea-utils/1.04.807 emboss/6.5.0 emboss/6.6.0 epa-ng/0.3.5
eugene/4.2a eval-align-graph evidence_modeler/1.1.1 exonerate/2.2.0

F

falcon faprotax/1.1 fast-tree/2.1.10 fasta/36.3.5a
fasta/36.3.8g fastme/2.1.5 fastqc/0.11.5 fastspar/0.0.9
fasttree/2.1.9 fastx/0.0.13 freebayes/1.3.1 fsa/1.15.9
funannotate/1.7.1      

G

g2/0.72 gamess-mpi/00 gamess/00 gappa/0.2.0
gaussian/g09 gawk/4.1.3 gawk/4.1.4 gblocks/0.91b
gcc/4.2.4 gcc/4.8.3(default) gcc/4.9.3 gcc/5.4.0
gcc/6.5.0 gdal/2.2.2 gene-mark-es-et/4.32 gene-mark-es-et/4.33
gene-mark-es-et/4.38 gene-mark-es-et/4.57 gene-mark-s/4.30 geneid/1.4.4
genometools/1.5.10 geos/3.6.2 ghc/7.10.2 git/2.16.2
git/2.24.1 glean/1.0.1 glib/2.14.6 glib/2.50.0
glibc/2.14.1 glibc/2.15 glimmerhmm/3.0.3 glpk/4.65
gmake/4.2.1 gmap/20171115 gmp/5.1.3 gnuplot/4.0.0
gnuplot/4.6.7 gnuplot/5.2.6 gnutls/2.8.6 gnutls/3.6.3
google-sparsehash/2.0.3 gor/iv gperf/3.1 gpp/2.25
gromacs_cuda/5.1.4 gromacs_mpi/2018.8 gromacs_mpi/4.5.4 gromacs_mpi/5.1.4
gromacs_no_mpi/5.1.4 gsl/1.16 gsl/1.9 gsl/2.6

H

hdf5/1.10.0 hdf5/1.10.1 hisat2/2.1.0 hmmer/2.4i
hmmer/3.1b2 hmmer/3.2.1 homologhmm/1.05 hwloc/1.9.1
hyphy/2.3.3      

I

i-adhore/3.0 igv/2.3.72 imageMagic/7.0.8-45 infernal/1.1.2
interproscan/5.21-60.0 interproscan/5.30-69.0 iqtree/1.6.11 isimpa/1.3.3
isl/0.12.2 isl/0.15 isl/0.16.1 itsx/1.0.11

J

jasper/1.900.1 java/jdk1.8.0_101 java/jdk1.8.0_241 java/jre1.6.0_05-p
java/jre1.7.0_67 java/jre1.8.0_162 java/jre1.8.0_66 jcvi-sift/1.03
jellyfish/2.2.10 jmodeltest/2.1.10    

K

kalign/1.04 kallisto/0.43.0 kmergenie/1.7051 kohgpi/1.5
kraken2/2.0.8      

L

lapack/3.8.0 last/980 libffi/3.2.1 libgcrypt/1.8.3
libgd/2.2.3 libgpg-error/1.32 liblzma/4.27.1 libnettle/3.4
libogg/1.3.2 libpng/1.2.50 libpq/9.6.1 libpsortb/1.0
libtasn1/4.9 libtheora/1.1.1 libtiff/3.8.2 libtool/2.4.6
libunistring/0.9.10 libvdpau/0.5 libvdpau/0.9 libvdpau/1.1.1
libvorbis/1.3.5 lipop/1.0a locarna/1.9.2.1 lynx/2.8.8
lzma/4.32.7      

M

m4/1.4.17 m4/1.4.18 mafft/7.305 makedepend/1.0.5
mario/1.1 mauve/20150226 mcl/14-137 megacc/10.1.7
megacc/7.0.18 megahit/1.1.4 megahit/1.2.3 meme/4.11.2
meme/5.0.5 mgltools/1.5.6 microbiomeutil/1.0 minced/0.3.0
miniconda2/4.7.12.1 miniconda3/4.7.12.1 mmseq2/74e23d modeller/9.17
mono/1.1.7.4 mothur/1.36.1 mothur/1.39.4 mothur/1.39.5
mothur/1.40.5 mothur/1.41.1 mothur/1.42.3 mpc/1.0.3
mpfr/3.1.3 mpich/3.0.4 mrbayes-gpu/3.2.6 mrbayes/3.1.2
mrbayes/3.2.7a mreps/2.6 msa/2.1 msaprobs-mpi/1.0.5
msaprobs/0.9.7 mummer/3.23 muscle/3.8.1551 muscle/3.8.31
muscle/3.8.425 muscle/4.0    

N

ncbi-blast/2.2.28 ncbi-blast/2.3.0 ncbi-blast/2.6.0 ncbi-sra-toolkit/2.9.2
ncurses/6.1 netcdf/4.1.3 netmhcii/2.3 nettle/3.4
ngs-snp nim/0.18.0 novoplasty/3.6 nseg

O

open-scene-graph/3.2.3 open-scene-graph/3.6.5 openbabel/2.3.2 openmpi/1.4.4
openssl/1.0.2t orf-finder/0.1.0 orthofinder/2.3.3 orthomcl/2.0.9
osgearth/2.7      

P

p11-kit/0.23.14 pairfq/0.16.0 paml/4.9h pannzer/2
papara_nt/2.5 parallel-netcdf/1.8.1 parallel/20180822 pasa/2.3.3
pasta/1.8.5 paste-classifier/1.0 patchelf/0.10 paup/4a154
pblat-cluster/0.1-0 pblat/1.6-0 pcma/1.0 pcre/8.38
pcre/8.43 pcre2/2.10.20 pear/0.9.10 perl/5.20.3
perl/5.24.0(default) perl/5.26.1 perl/5.28.2 pfam_scan/1.6
pftools/2.3.4 phageterm/1.0.12 phispy/2.3 phobius/1.01
phylip/3.696 phyml/3.1 picrust/1.1.1 picrust2/2.1.2-b
piler/1.0 plumed/2.6.0 poa/2 postgresql/10.1
prank/170427 prinseq/0.20.4 probcons/1.12 prodigal/2.6.3
proj/4.9.3 prokka/1.13 prokka/1.14.5 psortb/3.0.4
python/2.7.11 python/2.7.17 python/2.7.9 python/3.5.1
python/3.5.7 python/3.7.4    

Q

qiime/1.9.1 qiime2/2019.10 qt/4.8.7 qt/5.14.1
qt/5.3.1 qualimap/2.2 quantum-espresso/6.4.1 quast/4.3
quast/5.0.2      

R

r/3.2.3 r/3.4.1 r/3.4.2 r/3.5.3
r/3.6.3 raxml/7.3.0 raxml/8.2.12 readline/8.0
recon/1.08 repeatMasker/1.0 repeatMasker/4.0.6 repeatModeller/1.0.8
repeatScout/1.0.5 repet/2.5 repexTarean/0.3.1 resfinder/default
ripcal/2.0 rmblast/2.2.28 rnammer/1.2 roary/3.12.0-17
rocksdb/5.18.4 rocksdb/6.6.4 rsem/1.2.31  
samtools/0.1.17 samtools/1.10 samtools/1.3 samtools/1.6
scipio/1.4 sdl2-image/2.0.1 sdl2/2.0.5 sepp/4.3.9
seqtk/1.2-r95 sfld/default sga/0.10.15 signalp/4.1
snap/2013-11-29 soapdenovo/2.04 spades/3.11.0 spades/3.12.0
spades/3.9.0 sparsehash/2.0.3 sqlite/3.29.0 sspace-longread/1.1
sspace-standard/3.0 star/2.7.3a structure/2.3.4 swig/3.0.10
swig/3.0.12      

T

t_coffee/13.39 t_coffee/8.99 tandemRepeatFinder/4.09 tantan/13
targetp/1.1b tbl2asn/forever tensorflow-java/1.13.2 tensorflow-java/1.15.0
tensorflow_py2.7/1.3 tensorflow_py3.5/1.3 texinfo/6.5 thrgibbs3f90/1.0
tinker/7.1.2 tmhmm/2.0c tophat/2.1.1 transdecoder/3.0.1
tree-tagger/3.2.2 trf/4.09 trimal/1.2 trimal/1.3
trimmomatic/0.36 trinity/2.2.0 trinity/2.2.0.bk trinity/2.5.1
trinotate/3.0.1 trna-scan-se/1.3.1 txt2regex/0.8  

U

udunits/2.2.26 unbound/1.7.3 unrar/5.6.6 usearch/10.0.240
usearch/5.2.236 usearch/6.1.544 usearch/7.0.1090 usearch/8.1.1861

V

varscan/2.4.2 vcftools/0.1.13 velvet/1.2.10 velvetOptimiser/2.2.6
viennarna/2.3.1 viennarna/2.4.12 viromescan/default virsorter/1.0.6
virus-seeker-discovery/0.03 virus-seeker-virome/0.063 vmd/1.9.3 vsearch/2.11.1
vsearch/2.13.3 vsearch/2.14.2 vsearch/2.5.0  

W

weka/3.8.3 wise/2.4.1 wombat worf/3.5.1
wx-widgets/3.1.0      

X

xmlto/0.0.28 xz/5.2.3    

Y

Z

zlib/1.2.7